L protein CBG21920 [C. briggsae] Novel NovelAccession AAM47606 NP_498341 P29779 NP > 자유게시판

L protein CBG21920 [C. briggsae] Novel NovelAccession AAM47606 NP_498341 P29779 NP_505374 ACD88888 ABV44405 CAA65506 CAE56371 --NP_501440 -XP_001677444 -BAF43534 XP_001679653 YP_026087 AAC48358 P29190 NP_498111 NP_006947 -XP_001678358 ---E-value 0.0 4e-40 5e-10 1e-25 1e-71 2e-82 3e-30 2e-66 --1e-141 -3e-43 -2e-14 3e-08 1e-153 9e-22 1e-151 1e-149 7e-70 -2e-21 ---C. elegans gene M03F4.2 F42A10.7a F08H9.4 B0222.6a F54C1.7 Y105E8B.1a T07H6.3 F09F7.2a --T01B11.4 -ZK721.2 -ZK970.7 ZK84.1a MTCE.26 F41F3.4 R11A5.4a C34E10.6a MTCE.23 -R06C7.4a ---elegans homolog has higher Staurosporine probability match than the best GenBank descriptorPage 4 of(page number not for citation purposes)BMC Genomics 2009, 10:http://www.biomedcentral.com/1471-2164/10/rounding the main sense organs (amphids) and the hypodermis. Seven of the 25 most abundantly represented transcripts from A. avenae had no significant similarity to any sequence in the non-redundant protein database (Table 2). Since most nematode data are available only as ESTs and therefore not included in the BLASTX analysis, we compared these 7 contigs against dbEST using BLASTN and TBLASTX. However, these searches returned no significant matches (E PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/16989806 databases were searched against non-redundant nucleotide and dbEST databases using BLASTN and TBLASTX (employing a cut-off of 1e-05). 56 clusters generated matches in these searches but no matches were obtained for the remaining 862 sequences (31.9 ). Table 3 shows the 15 gene products with the highest level of conservation (E-value ranging from 0 to e-151) between A. avenae and C. elegans; these include gene products involved in cell structure (for example, actin, UNC87), protein biosynthesis or regulation (for example,Color scale of maximal BLAST scores for tiles Non- nematode 27 1321 (48.9 )No match for 918 cluster sequences 14 C. elegans 1567 (58.0 )137 Other nematodes 1750 (64.8 )Figure 3 using SimiTri Comparison of A. avenae cluster sequences with C. elegans, other nematodes and non-nematode protein sequence databases Comparison of A. avenae cluster.